PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG016961.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family E2F/DP
Protein Properties Length: 502aa    MW: 56033.5 Da    PI: 5.0944
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG016961.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP86.22.5e-27151216171
      E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                  r+++sL+llt+kf++l++++e+gi++ln++a++L   +v  ++RRiYDi+NVLe+++liekk kn+i+wkg
  CCG016961.1 151 RYDSSLGLLTKKFINLIKRAEDGILDLNKAADTL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIQWKG 216
                  6899******************************...99..****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467857.48E-17151214IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.8E-28151217IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.9E-34151216IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.1E-24153216IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146604.64E-43228334No hitNo description
SuperFamilySSF1440743.92E-30230334No hitNo description
PfamPF164211.8E-30233332IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MSNSQAPNNQ SMKQPQQNSM QSHAPNQCQQ HQQLSFSSMK PHFLPPGDYH RFGVDHRRPV  60
SDHDVEGIVV KPPTLKRKSD AADHQGESSE WNAGHGYMEV VTSPLQTPVS GKGGKTPKTS  120
RLSRSGKSAS QSAAGALGSP GNNVTPTGPI RYDSSLGLLT KKFINLIKRA EDGILDLNKA  180
ADTLEVQKRR IYDITNVLEG IGLIEKKLKN RIQWKGHDVS RPREGDGNNV ATLQAEVENL  240
TIEERRLDEQ TREMQERLRD LSVDEKNQKW LFVTKEDIKI LPGFQNETLI AIKAPHGTTL  300
EVPDPDEAVD YPQRRYRIVF RSTMGPIDVY LVSQFEEKFE DIQGAEPPPS DSSTLVFNEN  360
PATTMVTEES RAKEFEMQEQ DGHRMCSELN TSHDFKDARC QLLLFAGNVN NTCKHIQLSM  420
MDRDSTLCSD NCLEISDADY WLLSDADVSI TDISLTAKIA VVEWNDLDTL HNDYVIPDFS  480
TPQPQTPSNP TEVPPAANTT AG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A1e-25146216273PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1795060.0AY179506.1 Populus alba E2F mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011043212.10.0PREDICTED: transcription factor E2FB-like
SwissprotQ9FV711e-137E2FB_ARATH; Transcription factor E2FB
TrEMBLB9HQ230.0B9HQ23_POPTR; E2F transcription factor-1 family protein
STRINGPOPTR_0009s16350.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19473490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.21e-125E2F transcription factor 1